example::aln_t Struct Reference

Classes
struct	alignment_details

Public Types
using	accession_t = std::string
using	version_t = uint32_t
using	seq_id_t = std::pair< accession_t, version_t >
using	gene_id_t = int32_t
using	pos_t = int64_t

Public Member Functions
	aln_t (const aln_t &)=delete
aln_t &	operator= (const aln_t &)=delete
	aln_t (aln_t &&)=default
aln_t &	operator= (aln_t &&)=default
	aln_t ()=default

Public Attributes
int64_t	aln_id
gene_id_t	gene_id
seq_id_t	mrna_id
seq_id_t	chr_id
pos_t	chr_start
pos_t	chr_stop
pos_t	chr_cds_start_pos
int64_t	score

Static Public Attributes
static constexpr pos_t	invalid_pos = 0

Detailed Description

Definition at line 47 of file aln_filter.cpp.

Member Typedef Documentation

accession_t

using example::aln_t::accession_t = std::string

Definition at line 49 of file aln_filter.cpp.

gene_id_t

using example::aln_t::gene_id_t = int32_t

Definition at line 52 of file aln_filter.cpp.

pos_t

using example::aln_t::pos_t = int64_t

Definition at line 53 of file aln_filter.cpp.

seq_id_t

using example::aln_t::seq_id_t = std::pair<accession_t, version_t>

Definition at line 51 of file aln_filter.cpp.

version_t

using example::aln_t::version_t = uint32_t

Definition at line 50 of file aln_filter.cpp.

Constructor & Destructor Documentation

aln_t() [1/3]

example::aln_t::aln_t ( const aln_t &  )

delete

aln_t() [2/3]

example::aln_t::aln_t ( aln_t &&  )

default

aln_t() [3/3]

example::aln_t::aln_t ( )

default

Member Function Documentation

operator=() [1/2]

aln_t& example::aln_t::operator= ( const aln_t &  )

delete

operator=() [2/2]

aln_t& example::aln_t::operator= ( aln_t &&  )

default

Member Data Documentation

aln_id

int64_t example::aln_t::aln_id

Definition at line 62 of file aln_filter.cpp.

chr_cds_start_pos

pos_t example::aln_t::chr_cds_start_pos

Definition at line 69 of file aln_filter.cpp.

chr_id

seq_id_t example::aln_t::chr_id

Definition at line 66 of file aln_filter.cpp.

chr_start

pos_t example::aln_t::chr_start

Definition at line 67 of file aln_filter.cpp.

chr_stop

pos_t example::aln_t::chr_stop

Definition at line 68 of file aln_filter.cpp.

gene_id

gene_id_t example::aln_t::gene_id

Definition at line 63 of file aln_filter.cpp.

invalid_pos

constexpr pos_t example::aln_t::invalid_pos = 0

static

Definition at line 58 of file aln_filter.cpp.

mrna_id

seq_id_t example::aln_t::mrna_id

Definition at line 64 of file aln_filter.cpp.

score

int64_t example::aln_t::score

Definition at line 71 of file aln_filter.cpp.

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The documentation for this struct was generated from the following file:

• /panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/home/astashya/basic_project/bb/fn/test/aln_filter.cpp